Купрюшкин М.С., Филатов А.В., Миронова Н.Л., Патутина О.А., Черников И.В., Черноловская Е.Л., Зенкова М.А., Пышный Д.В., Stetsenko D.A., Altman S., Власов В.В. Аntisense oligonucleotide gapmers containing phosphoryl guanidine groups reverse MDR1 mediated multiple drug resistance of tumor cells. Mol. Ther. Nucl. Acids. 2022. V. 27. P. 211-226.

Patutina O.A., Miroshnichenko S.K., Sen'kova A.V., Savin I.A., Gladkikh D.V., Burakova E.A., Fokina A.A., Maslov M.A., Shmendel E., Wood M., Vlassov V.V., Altman S., Stetsenko D., Zenkova M.A. Mesyl phosphoroamidate backbone modified antisense oligonucleotides targeting miR-21 with enhanced in vivo therapeutic potency. PNAS. 2020. V. 51. N 22. P. 32370-32379.

Terekhov S.S., Eliseev I.E., Ovchinnikova L.A., Kabilov M.R., Prjibelski A.D., Tupikin A.E., Smirnov I.V., Belogurov A.A., Severinov K., Lomakin Y., Altman S., Gabibov A.G. Liquid drop of DNA libraries reveals total genome information. PNAS. 2020. V. 117. N 44. P. 27300-27306.

Novopashina D.S., Vorobyeva M.A., Nazarov A., Davydova A.S., Danilin N., Koroleva L.S., Matveev A.L., Bardasheva A., Tikunova N.V., Kupryushkin M.S., Pyshnyi D.V., Altman S., Venyaminova A.G.Novel Peptide Conjugates of Modified Oligonucleotides for Inhibition of Bacterial RNase P. Front. Pharmacol. 2019. V. 10. P. 813.

Miroshnichenko S.K., Patutina O.A., Burakova E.A., Chelobanov B.P., Fokina A.A., Vlassov V.V., Altman S., Zenkova M.A., Stetsenko D.A. Mesyl phosphoramidate antisense oligonucleotides as an alternative to phosphorothioates: improved biochemical and biological properties. PNAS. 2019. V. 116. N 4. P. 1229-1234.

Новопашина Д.С., Назаров А.С., Воробьева М.А., Купрюшкин М.С., Давыдова А.С., Ломзов А.А., Пышный Д.В., Альтман С., Веньяминова А.Г.Модифицированные олигонуклеотиды для направленного расщепления РНК бактериальной РНКазой Р. Молекулярная биология. 2018. Т. 52. № 6. C. 1045–1054.

Дмитриенко Е.В., Пышная И.А., Мартьянов О.Н., Пышный Д.В. Молекулярно-импринтированные полимеры для биомедицинских и биотехнологических применений. Успехи химии, 2016. Т. 85. № 5. С. 513–536.

Vorobjeva M.A., Timoshenko V.V., Vorobyev P.E., Venyaminova A.G. Aptamers against immunologic targets: diagnostic and therapeutic prospects. Nucleic Acid Ther. V. 26. N 1. P. 52-65.

- Davydova A., Vorobjeva M., Pyshnyi D., Altman Sidney., Vlassov V., Venyaminova A. Aptamers against pathogenic microorganisms. Critical Reviews in Microbiology. 2016. V. 42. N 6. P. 847-865.

Kuznetsov N.A., Kupryushkin M.S., Abramova T.V., Kuznetsova A.A., Miroshnikova A.D., Stetsenko D.A., Pyshnyi D.V., Fedorova O.S. New Oligonucleotide Derivatives as Unreactive Substrate Analogues and Potential Inhibitors of Human Apurinic/Apyrimidinic Endonuclease APE1. Mol. BioSyst. 2015. V. 12. N 1. P. 67-75.

Lomzov A.A., Vorobjev Y.N., Pyshnyi D.V. Evaluation of Gibbs Free Energy Changes and Melting Temperatures of DNA/DNA Duplexes Using Hybridization Enthalpy Calculated by Molecular Dynamics Simulation. J. Phys. Chem. B. 2015. V. 119. N 49. P. 15221–15234.

Shevelev G.Y., Krumkacheva O.A., Lomzov A.A., Kuzhelev A.A., Rogozhnikova O.Yu., Trukhin D.V., Troitskaya O. A., Tormyshev V.M., Fedin M.V., Pyshnyi D.V., Bagryanskaya E.G. Triarylmethyl Labels: Toward Improving the Accuracy of EPR Nanoscale Distance Measurements in DNAs. J. Phys. Chem. B. 2015. V. 119, N 43, P. 13641-13648.

Lebedeva N.A., Anarbayev R.O., Kupryushkin M.S., Rechkunova N.I., Pyshnyi D.V., Stetsenko D.A., Lavrik O.I. Design of a New Fluorescent Oligonucleotide-Based Assay for a Highly Specific Real-Time Detection of Apurinic/Apyrimidinic Site Cleavage by Tyrosyl-DNA Phosphodiesterase 1. Bioconjugate. Chem. 2015. V. 26, N 10, P. 2046-2053.

Купрюшкин М.С., Апухтина В.С., Васильева С.В., Пышный Д.В., Стеценко Д.А. Новый простой и удобный метод получения олигонуклеотидов, содержащих остатки пирена или холестерина. Известия Академии Наук, Сер. Хим. 2015. №7, С. 1678-1681.

Lomzov A.A., Gorelov V.V., Golyshev V.M., Abramova T.V. Pyshnyi D.V. 139 Analysis of structure and thermodynamics of modified DNA duplexes using molecular dynamics simulation. Journal of Biomolecular Structure and Dynamics. 2015. V. 33. P. 89-91.

Fokina A.A., Stetsenko D.A., Francois J.-K. DNA enzymes as potential therapeutics: towards clinical application of 10-23 DNAzymes. Expert Opin. Biol. Ther. 2015 V. 15. N5. P. 1-23.

Lomzov A.A., Shevelev G.J., Sheglov D.V., Latyshev A.V., Stetsenko D.A., Pyshnyi D.V. Nanorings from Concatemeric DNA: Chemical Modification Drives Nanostructure Formation. J. Nanosci. Nanotechno. 2015. V. 15 (N 6). P. 4170-4177.

Vasilyeva S.V., Kuznetsova A.S., Khalyavina J.G., Glazunova V.A., Shtil A.A., Gornostaev L.M., Silnikov V.N. Novel Fluorescent Pyrimidine Nucleosides Containing 2,1,3-Benzoxadiazole and Naphtho-[1,2,3-CD] Indole-6 (2H)-One Fragments. Nucleosides Nucleotides Nucleic Acids. 2014. V. 33(N 9). P. 615-625.

Купрюшкин М.С., Пышный Д.В., Стеценко Д.А. Фосфорилгуанидины. Новый класс аналогов нуклеиновых кислот. Acta Naturae 2014 T. 6. № 4 (23). C. 123-125.

Apartsin E.K., Buyanova M., Novopashina D.S., Ryabchikova E.I., Filatov A.V., Zenkova M.A., Venyaminova A.G. Novel Multifunctional Hybrids of Single-Walled Carbon Nanotubes with Nucleic Acids: Synthesis and Interactions with Living Cells ACS Appl. Mater. Interfaces. 2014. V. 6. N3. P. 1454-1461.

Kupryushkin M.S., Nekrasov M.D., Stetsenko D.A. , and Pyshnyi D.V. Efficient Functionalization of Oligonucleotides by New Achiral Nonnucleosidic Monomers. Org. Let. 2014. V. 6, N16(11), P. 2842-2845.

Pyshnaya I.A., Razum K.V., Poletaeva J.E., Pyshnyi D.V., Zenkova M.A., Ryabchikova E.I. Comparison of Behaviour in Different Liquids and in Cells of Gold Nanorods and Spherical Nanoparticles Modified by Linear Polyethyleneimine and Bovine Serum Albumin.BioMed Research International. 2014. V.2014, Article ID 908175, 13 pages.

Shevelev G.Yu., Krumkacheva O.A., Lomzov A.A., Kuzhelev A.A., Rogozhnikova O.Yu., Trukhin D.V., Troitskaya T.I., Tormyshev V.M., Fedin M.V., Pyshnyi D.V., and Bagryanskaya E.G. Physiological-Temperature Distance Measurement in Nucleic Acid using Triarylmethyl-Based Spin Labels and Pulsed Dipolar EPR Spectroscopy. Journal of the American Chemical Society. 2014. V. 136(N28), P. 9874-9777.

Krasheninina O.A., Novopashina D.S., Lomzov A.A., Venyaminova A.G. 2'-Bispyrene-Modified 2'-O-Methyl RNA Probes as Useful Tools for the Detection of RNA: Synthesis, Fluorescent Properties, and Duplex Stability. ChemBioChem. 2014. V. 15(N 13), P. 1939-1946.

Abramova T.V., Belov S.S., Tarasenko Y.V., Silnikov V.N. Solid-phase-supported synthesis of morpholinoglycine oligonucleotide mimics. Beilstein J. Org Chem. 2014. V. 10, P. 1151-1158.

Gvozdeva O.V., Dovydenko I.S., Venyaminova A.G., Zenkova M.A., Vlassov V.V., Chernolovskaya E.L. 42- and 63-bp anti-MDR1-siRNAs bearing 2'-OMe modifications in nuclease-sensitive sites induce specific and potent gene silencing. FEBS Lett. 2014. V. 588(N6), P. 1037-1043.

Vorobyeva M.A., Krasitskaya VV, Fokina A.A., Timoshenko V.V., Nevinsky G.A., Venyaminova A.G., Frank L.A. RNA Aptamer against Autoantibodies Associated with Multiple Sclerosis and Bioluminescent Detection Probe on Its Basis. Analytical Chemistry. 2014. V. 86(N5), P. 2590-2594.

Альтман C. Каталитическая РНК: лекарство из добиологической жизни. Наука из первых рук. 2014. Т. 3/4, № 57/58, С. 79-83.

Vorobyeva M.A., Timoshenko V.V., Тиванова Fokina A.A., Timofeyeva N.A., Nevinsky G.A., Venyaminova A.G. Selection and properties of 2 ′ -modified RNA aptamers against MBP-specific autoantibodies from patients with multiple sclerosis. FEBS Journal. 2013. V. 280, S. 1, P. 334.

S. Altman. Antibiotics: present and future. FEBS Journal. 2013. V. 280, S. 1, P. 1.

Maslov M.A., Morozova N., Kabilova T.O., Morozova N., Zenkova M.A. Cationic liposomes for efficient delivery of nucleic acids. FEBS Journal. 2013. V. 280, S. 1, P. 83.

Chernikov I.V., Petrova N.S., Meshchaninova M.I., Dovydenko I.S., Venyaminova A.G., Zenkova M.A., Vlassov V.V., Chernolovskaya E.L. The interaction of lipophilic derivatives of siRNA with hematopoietic and tumor cells.FEBS Journal. 2013. V. 280, S. 1, P. 81-82.

Brenner E.V., Brouchkov A.V., Griva G.I., Kashuba E., Kashuba I., Kurilschikov A.M., Melefors O., Repin V.E., Melnikov V.P., Vlassov V.V. The draft genome sequence of Bacillus cereus F strain, isolated from ancient permafrost sample. FEBS Journal. 2013. V. 280, S. 1, P. 77.

Lomzov A.A., Vorobjev Y.N., Pyshnyi D.V. Molecular dynamics simulation approach for DNA duplex thermal stability prediction.FEBS Journal. 2013. V. 280, S. 1, 539-540.

Дмитриенко Е.В., Тронин А.В., Попов В.П., Пышная И.А., Пышный Д.В. Иммобилизация биомолекулярных зондов на поверхность Si / SiO2.Новосибирск. Вестник НГУ. Серия: Биология, клиническая медицина. 2013. Т 11(4), С. 35-43.

Butorin A., Novopashina D.S., Krasheninina O.A., Nozeret K., Venyaminova A.G. Fluorescent Probes for Nucleic Acid Visualization in Fixed and Live Cells. Molecules. 2013. V. 18(12). P. 15357-15397.

Kholodar S.A., Novopashina D.S., Meschaninova M.I., Venyaminova A.G. Multipyrene tandem probes for point mutations detection in DNA. Journal of Nucleic Acids. 2013. P. 1-12. ID 860457.