Публикации

Публикации 2023

1. Ritter G.S., Proskurina A.S., Meschaninova M.I., Potter E.A., Petrova D.D., Ruzanova V.S., Kirikovich S.S., Levites E.V., Efremov Y.R., Nikolin V.P., Popova N.A., Venyaminova A.G., Taranov O.S., Ostanin A.A., Chernykh E.R., Kolchanov N.A., Bogachev S.S. Impact of Double-Stranded RNA Internalization on Hematopoietic Progenitors and Krebs-2 Cells and Mechanism. Int. J. Mol. Sci. 2023. V. 24. N 5. P. 4858. DOI: 10.3390/ijms24054858
2. Shnaider S., Zhilich S.V., Zotkina L.V., Boxleitner K.A., Taylor W.T.T., Sayfullaev N., Koval V.V., Baranova S.V., Chernonosov A.A., Kutnyakova L.A., Tonasso-Calvi`ere L., Orlando L., Spengler R. Occupation of highland Central Asia: New evidence from Kurteke rockshelter, Eastern Pamir. Archaeol. Res. Asia. 2023. V. 34. P. 100443. DOI: 10.1016/j.ara.2023.100443
3. Kanazhevskaya L.Y., Gorbunov A.A., Zhdanova P.V., Koval V.V. Dataset for Spectroscopic, Structural and Dynamic Analysis of Human Fe(II)/2OG-Dependent Dioxygenase ALKBH3. Data. 2023. V. 8. P. 57. DOI: 10.3390/data8030057
4. Ambros E., Karpova E., Kotsupiy O., Trofimova E., Zakabkuk G.A., Chernonosov A.A., Koval V.V., Novikova T. A Mechanocomposite Based on Biogenic Silica and Green Tea Flavonoids Modulates Adaptability of Strawberry Microclones to In Vitro and Ex Vitro Conditions. J Soil Sci Plant Nutr. 2023. V. 23, P. 612-627. DOI: 10.1007/s42729-022-01069-3
5. Ovcherenko S.S., Shernyukov A.V., Nasonov D.M., Endutkin A.V., Zharkov D.O., Bagryanskaya E.G. Dynamics of 8-oxoguanine in DNA: Decisive effects of base pairing and nucleotide context. Journal of the American Chemical Society. 2023. V. 145. N 10. P. 5613-5617. DOI: 10.1021/jacs.2c11230
6. Raskolupova V.I., Wang M., Dymova M.A., Petrov G.O., Shchudlo I., Taskaev S.Y., Abramova T.V., Godovikova T.S., Silnikov V.N., Popova T.V. Design of the New Closo-Dodecarborate-Containing Gemcitabine Analogue for the Albumin-Based Theranostics Composition. Molecules. 2023. V. 28. P. 2672. DOI: 10.3390/molecules28062672
7. Andreeva I.S., Safatov A.S., Morozova V.V., Solovyanova N.A., Puchkova L.I., Buryak G.A., Olkin S.E., Reznikova I.K., Emelyanova E.K., Okhlopkova O.V., Simonenkov D.V., Belan B.D. Composition and Concentration of the Biogenic Components of the Aerosols Collected over Vasyugan Marshes and Karakan Pine Forest at Altitudes from 500 to 7000 m. Atmosphere. 2023. V. 14. N 2. P. 301. DOI: 10.3390/atmos14020301
8. Kropacheva N.O., Golyshkin A.A., Vorobyeva M.A., Meschaninova M.I.Convenient Solid-Phase Attachment of Small-Molecule Ligands to Oligonucleotides via a Biodegradable Acid-Labile P-N-Bond. Molecules. 2023. V. 28. N 4. P. 1904. DOI: 10.3390/molecules28041904
9. Zakharova Yu., Marchenkov A., Petrova D., Bukin Yu., Morozov A., Bedoshvili Y., Podunay Yu., Davidovich O., Davidovich N., Bondar A.A., Kahlert M., Likhoshway Y. Delimitation of Some Taxa of Ulnaria and Fragilaria (Bacillariophyceae) Based on Genetic, Morphological Data and Mating Compatibility. Diversity. 2023. V. 15. N 2. P. 271. DOI: 10.3390/d15020271
10. Кулишова Л.М., Вохтанцев И.П., Ким Д.В., Жарков Д.О. Механизмы специфичности системы CRISPR/Cas9 в геномном редактировании. Молекулярная биология. 2023. Т. 57. № 2. C. 269-284. DOI: 10.31857/S0026898423020155
11. Юдкина А.В., Коваленко Е.А., Ендуткин А.В., Панферова Е.П., Кириленко А.А., Коханенко А.А., Жарков Д.О. Факторы, влияющие на стабильность тримерной формы 2′-дезоксиуридин-5′-трифосфатнуклеотидгидролазы Escherichia coli. Молекулярная биология. 2023. Т. 57. № 2. С. 330-339. DOI: 10.31857/S0026898423020246
12. Оскорбин И.П., Иванов А.А., Смертина М.А., Демидова И.А., Боярских У.А., Кечин А.А., Бахарев С.Ю., Самуйленкова О.В., Вихлянов И.В., Кушлинский Н.Е., Филипенко М.Л. Выявление химерных генов NTRK3 в клетках папиллярного рака щитовидной железы c помощью анализа дисбаланса экспрессии 5' и 3' фрагментов мРНК. Бюллетень экспериментальной биологии и медицины. 2023. Т. 175. № 2. С. 203-209. DOI: 10.47056/0365-9615-2023-175-2-203-209
13. Prokopyeva E.A., Kurskaya O.G., Solomatina M.V., Sobolev I.A., Saroyan T.A., Dubovitskiy N.A., Derko A.A., Kozhin P.M., Alikina T.Y., Kabilov M.R., Shestopalov A.M., Sharshov K.A. Virological and genetic characteristics of human respiratory syncytial viruses isolated in Russia, 2017-2018. J. Infect. Dev. Ctries. 2023. V. 17. N 2. P. 251-259. DOI: 10.3855/jidc.17462
14. Патракова Е.А., Бирюков М.М., Троицкая О.С., Новак Д.Д., Милахина Е.В., Гугин П.П., Закревский Д.Э., Швейгерт И.В., Коваль О.А. Цитотоксическая активность атмосферной холодной плазменной струи в отношении 3D-клеточной модели рака молочной железы человека. Цитология.2023. Т.65. № 1. С. 398-53. DOI: 10.31857/S004137712301008X
15. Dyrkheeva N.S., Malakhova A.A., Zakharenko A.L., Okorokova L.S., Shtokalo D.N., Pavlova S.V., Medvedev S.P., Zakiyan S.M., Nushtaeva A.A., Tupikin A.E., Kabilov M.R., Khodyreva S.N., Luzina O.A., Salakhutdinov N.F., Lavrik O.I. Transcriptomic Analysis of CRISPR/Cas9-Mediated PARP1-Knockout Cells under the Influence of Topotecan and TDP1 Inhibitor. Int. J. Mol. Sci. 2023. V. 24. N 6. P. 5148. DOI: 10.3390/ijms24065148
16. Frolov I., Agback T., Palchevska O., Dominguez F., Lomzov A.A., Agback P., Frolova E.I. All Domains of SARS-CoV-2 nsp1 Determine Translational Shutoff and Cytotoxicity of the Protein. Journal of Virology. 2023. e0186522. DOI: 10.1128/jvi.01865-22
17. Popova V.K., Poletaeva Y., Chubarov A.S., Dmitriyenko E.V. pH-Responsible Doxorubicin-Loaded Fe3O4@CaCO3 Nanocomposites for Cancer Treatment. Pharmaceutics. 2023. V. 15. N 3. P. 771. DOI: 10.3390/pharmaceutics15030771
18. Markov A.V., Savin I.A., Zenkova M.A., Sen'kova A.V. Identification of Novel Core Genes Involved in Malignant Transformation of Inflamed Colon Tissue Using a Computational Biology Approach and Verification in Murine Models. Int. J. Mol. Sci. 2023. V. 24. P. 4311. DOI: 10.3390/ijms24054311
19. Ermakov E.A., Mednova I.A., Boiko A.S., Buneva V.N., Ivanova S.A. Chemokine Dysregulation and Neuroinflammation in Schizophrenia: A Systematic Review. Int. J. Mol. Sci. 2023. V. 24. N 3. P. 2215. DOI: 10.3390/ijms24032215
20. Urusov A.E., Tolmacheva A.S., Aulova K.S., Nevinsky G.A. Autoantibody-Abzymes with Catalase Activity in Experimental Autoimmune Encephalomyelitis Mice. Molecules. 2023. V. 28. N 3. P. 1330. DOI: 10.3390/molecules28031330
21. Николаев К.Ю., Шилова А.В., Ковалева А.Я., Лифшиц Г.И. Роль мозгового натрийуретического пептида в патогенезе резистентной артериальной гипертензии. Российский кардиологический журнал. 2023. Т. 28. № 1. С. 111-116. DOI: 10.15829/1560-4071-2023-5188
22. Fedorov E., Samokhin A., Kozlova Y.N., Kretien S., Sheraliev T., Morozova V.V., Tikunova N.V., Kiselev A., Pavlov V. Short-Term Outcomes of Phage-Antibiotic Combination Treatment in Adult Patients with Periprosthetic Hip Joint Infection. Viruses. 2023.V. 15. N 2. P. 499. DOI: 10.3390/v15020499
23. Popova V.K., Poletaeva Y., Chubarov A.S., Pyshnyi D.V., Dmitriyenko E.V. Doxorubicin-Loaded Silica Nanocomposites for Cancer Treatment. Coatings. 2023. V. 13. N 2. C. 324. DOI: 10.3390/coatings13020324
24. Bulgakova A.E., Berdyugin A., Naumova O., Fomin B., Pyshnyi D.V., Chubarov A.S., Dmitriyenko E.V., Lomzov A.A. Solution pH Effect on Drain-Gate Characteristics of SOI FET Biosensor. Electronics. 2023. V. 12. N 3. P. 777. DOI: 10.3390/electronics12030777
25. Кечин А.А., Корюков М.А., Смертина М.А., Боробова В.С., Оскорбин И.П., Иванов А.А., Бахарев С.Ю., Боярских У.А., Кушлинский Н.Е., Филипенко М.Л. Отличия в транскриптомных профилях опухолей головного мозга и щитовидной железы с перестройкой генов NTRK. Бюллетень экспериментальной биологии и медицины. 2023. Т. 175. № 1. С. 91-99. DOI:10.47056/0365-9615-2023-175-1-91-99
26. Belousova E.A., Lavrik O.I. The Role of PARP1 and PAR in ATP-Independent Nucleosome Reorganisation during the DNA Damage Response. Genes. 2023. V. 14. N 1. P. 112. DOI: 10.3390/genes14010112
27. Bryzgunova O.E., Bondar A., Ruzankin P., Tarasenko A., Zaripov M., Kabilov M.R., Laktionov P.P. Locus-Specific Bisulfate NGS Sequencing of GSTP1, RNF219, and KIAA1539 Genes in the Total Pool of Cell-Free and Cell-Surface-Bound DNA in Prostate Cancer: A Novel Approach for Prostate Cancer Diagnostics. Cancers. 2023. V. 15. N 2. P. 431. DOI: 10.3390/cancers15020431
28. Knauer N.Yu., Pashkina E., Aktanova А., Boeva O., Arkhipova V., Barkovskaya M., Meschaninova M.I., Karpus A., Majoral J.-P., Kozlov V., Apartsin E.K. Effects of Cationic Dendrimers and Their Complexes with microRNAs on Immunocompetent Cells. Pharmaceutics. 2023. V. 15. N 1. P. 148. DOI: 10.3390/pharmaceutics15010148
29. Dymova M.A., Kichkailo A.S., Kuligina E.V., Richter V.A. Aptamers Enhance Oncolytic Viruses’ Antitumor Efficacy. Pharmaceutics. 2023. V. 15. N 1. P. 151. DOI: 10.3390/pharmaceutics15010151
30. Petrova, N.V., Chernonosov A.A., Koval V.V., Andreeva V.Yu., Erst A.S., Kuznetsov A.A., Kulikovskiy M.S., Wang W., Yu S-X., Kostikova V.A. LC-HRMS for the Identification of Quercetin and Its Derivatives in Spiraea hypericifolia (Rosaceae) and Anatomical Features of Its Leaves. Plants (Basel). 2023. V. 12. N 2. P. 381. DOI: 10.3390/plants12020381
31. Antropov D.N., Stepanov G.A. Molecular Mechanisms Underlying CRISPR/Cas-Based Assays for Nucleic Acid Detection. Curr. Issues Mol. Biol. 2023. V. 45.N 1. P. 649-662 DOI: 10.3390/cimb45010043
32. Shishkina L.N., M azurkov O.Yu., Bormotov N.I., Skarnovich M.O., Serova O.A., Mazurkova N.A., Skarnovich M.A., Chernonosov A.A., Selivanov B.A., Tikhonov A.Ya., Gamaley S.G., Shimina G.G., Sysoyeva G.M., Taranov O.S., Danilenko E.D., Agafonov A.P., Maksyutov R.A. Safety and Pharmacokinetics of the Substance of the Anti-Smallpox Drug NIOCH-14 after Oral Administration to Laboratory Animals. Viruses. 2023. V. 15. N 1. P. 205. DOI: 10.3390/v15010205Shishkina
33. Turner D., Shkoporov A.N., Lood C., · Millard A.D., Dutilh B.E., Alfenas‑Zerbini P., Zyl van L.J Aziz R.K., Oksanen H.M., Poranen M.M., Kropinski A.M., Barylski J., Brister J.R., Chanisvili N., Edwards R.A., Enault F., Gillis A., Knezevic P., Krupovic M., Kurtböke İ., · Kushkina A., Lavigne R., Lehman S., Lobocka M., Moraru C., Switt AM., Morozova V.V., Nakavuma J., Muñoz A.R., Rumnieks J., Sarkar B.L., Sullivan M.B., Uchiyama J., Wittmann J., Yigang T., Adriaenssens E.M. Abolishment of morphology-based taxa and change to binomial species names: 2022 taxonomy update of the ICTV bacterial viruses subcommittee. Archives of Virology. 2023. V. 168. P. 74. DOI: 10.1007/s00705-022-05694-2
34. Bulkhin A.O., Zykov V.V., Marchenko D.N., Kabilov M.R., Baturina O.A., Boyandin A.N., Anishchenko I.V., Rogozin D.Y. Long-chain alkenones in the lake sediments of North-Minusinsk Valley (southern Siberia): implications for paleoclimate reconstructions. Organic Geochemistry. 2023. P. 104541. DOI: 10.1016/j.orggeochem.2022.104541
35. Kechin A.A., Oskorbin I.P., Cherednichenko A., Khrapov E.A., Schwartz Y.B., Stavitskaya N., Filipenko M.L. Selection of IS6110 conserved regions for the detection of Mycobacterium tuberculosis using qPCR and LAMP. Archives of Microbiology. 2023. V. 205. N 2. P. 71. DOI: 10.1007/s00203-023-03410-5
36. Chernonosova V.S., Kuzmin I.E., Shundrina I.K., Korobeynikov M.V., Golyshev V.M., Chelobanov B.P., Laktionov P.P. Effect of Sterilization Methods on Electrospun Scaffolds Produced from Blend of Polyurethane with Gelatin. Journal of Functional Biomaterial. 2023. V. 14. N 2. P. 70. DOI: 10.3390/jfb14020070
37. Chepanova A.A., Zakharenko A.L., Dyrkheeva N.S., Chernyshova I.A., Zakharova O., Ilina E.S., Luzina O.A., Salakhutdinov N.F., Lavrik O.I. Influence of Tyrosyl-DNA Phosphodiesterase 1 Inhibitor on the Proapoptotic and Genotoxic Effects of Anticancer Agent Topotecan. Dokl Biochem Biophys. 2023. P. 1-6. DOI: 10.1134/S1607672922700077
38. PARP1 Gene Knockout Suppresses Expression of DNA Base Excision Repair Genes. Zakharenko A.L., Malakhova A.A., Dyrkheeva N.S., Okorokova L.S., Medvedev S.P., Zakiyan S.M., Kabilov M.R., Tupikin A.E., Lavrik O.I. Dokl Biochem Biophys. 2023. P. 1-6. DOI: 10.1134/S1607672922700028
39. Vasilyeva S.V., Baranovskaya E.E., Dyudeeva E., Lomzov A.A., Pyshnyi D.V. Synthesis of Oligonucleotides Carrying Inter-nucleotide N‑(Benzoazole)-phosphoramide Moieties. ACS Omega. 2023. V. 8. N 1. P. 1556−1566. DOI: 10.1021/acsomega.2c07083
40. “Pulsed Hypoxia” Gradually Reprograms Breast Cancer Fibroblasts into Pro-Tumorigenic Cells via Mesenchymal–Epithelial Transition. Nushtaeva A.A., Ermakov M., Abdurakhmanova M.M., Troitskaya O.S., Belovezhets T.N., Varlamov M., Gayner T.A., Richter V.A., Koval O.A. Int. J. Mol. Sci. 2023. V. 24. N 3. P. 2494. DOI: 10.3390/ijms24032494
41. Ochkasova A., Arbuzov G.D., Kabilov M.R., Tupikin A.E., Karpova G.G., Graifer D.M. AP lyase activity of the human ribosomal protein uS3: The DNA cleavage sequence specificity and the location of the enzyme active center. Biochim. Biophys. Acta - Proteins and Proteomics. 2023. V. 1871. N 2. P. 140880.DOI: 10.1016/j.bbapap.2022.140880
    
42. Zolotovskaia M.A., Modestov A., Suntsova M.V., Rachkova A., Koroleva E.V., Poddubskaya E.V., Sekacheva M.I., Tkachev V.S., Andrew Garazha Glusker A.A., Seryakov A., Vladimirova U., Rumiantsev P., Moisseev A., Zharkov D.O., Kuzmin D.V., Wang Y., Prassolov V., Shegay P.V., Li X., Steinbichler T.B., Kim E., Sorokin M., Buzdin A.B. Pan-cancer antagonistic inhibition pattern of ATM-driven G2/M checkpoint pathway vs other DNA repair pathways. DNA Repair. 2023. V. 123. P. 103448. DOI: 10.1016/j.dnarep.2023.103448
43. Sabitova Y.V., Rar V.A., Tikunov A., Yakimenko V.V., Korallo-Vinarskaya N., Livanova N.N., Tikunova N.V. Detection and genetic characterization of a putative novel Borrelia genospecies in Ixodes apronophorus / Ixodes persulcatus / Ixodes trianguliceps sympatric areas in Western Siberia. Ticks Tick-borne Dis. 2023. V. 14. N 1. P. 102075. DOI: 10.1016/j.ttbdis.2022.102075
44. Kechin A.A., Boyarskikh U.A., Barinov A., Tanas A., Kazakova S., Zhevlova A., Khrapov E.A., Subbotin S.V., Mishukova O.V., Kekeeva T., Demidova I., Filipenko M.L.A spectrum of BRCA1 and BRCA2 germline deleterious variants in ovarian cancer in Russia. Breast Cancer Res Treat. 2023. V. 197. N 2. P. 387-395.DOI: 1007/s10549-022-06782-2
45. Bakman A.S., Kuznetsova A.A., Yanshole L.V., Ishchenko A.A., Saparbaev M.K., Fedorova O.S., Kuznetsov N.A..Fluorescently labeled human apurinic/apyrimidinic endonuclease APE1 reveals effects of DNA polymerase β on the APE1–DNA interaction. DNA Repair. 2023. V. 123.P. 103450. DOI: 10.1016/j.dnarep.2023.103450
46. Yunusova N., Dzhugashvili E., Yalovaya A.I., Kolomiets L., Shefer A.A., Grigoryeva A.E., Tupikin A.E., Kondakova I., Tamkovich S.N.Comparative Analysis of Tumor-Associated microRNAs and Tetraspanines from Exosomes of Plasma and Ascitic Fluids of Ovarian Cancer Patients. Int. J. Mol. Sci. 2023. V. 23.N 1. P. 464.DOI: 10.3390/ijms24010464
47. Igolkina Y.P., Nikitin A., Verzhutskaya Y., Gordeyko N., Tikunov A., Epikhina T.I., Tikunova N.V., Rar V.A. Multilocus genetic analysis indicates taxonomic status of «Candidatus Rickettsia mendelii» as a separate basal group. Ticks Tick-borne Dis. 2023.V. 14.N 2.P. 102104.DOI: 10.1016/j.ttbdis.2022.102104
48. Novopashina D.S., Dymova M.A., Davydova A.S., Meschaninova M.I., Malysheva D.O., Kuligina E.V., Richter V.A., Kolesnikov V.A., Taskaev S.Y., Vorobyeva M.A.Aptamers for Addressed Boron Delivery in BNCT: Effect of Boron Cluster Attachment Site on Functional Activity. Int. J. Mol. Sci. 2023. V. 24. P. 306.DOI: 10.3390/ijms24010306
49. Grizanova E.V., Krytsyna T.I., Kalmykova G.V., Sokolova Е., Alikina T.Y., Kabilov M.R., Coates C.J., Dubovskiy I.M..Virulent and necrotrophic strategies of Bacillus thuringiensis in susceptible and resistant insects, Galleria mellonella. Microbial Pathogenesis. 2023.V. 175. P. 105958.DOI: 10.1016/j.micpath.2022.105958
50. Chubarov A.S., Oskorbin I.P., Novikova L.M., Filipenko M.L., Lomzov A.A., Pyshnyi D.V. Allele-Specific PCR for PIK3CA Mutation Detection Using Phosphoryl Guanidine Modified Primers. Diagnostics. 2023. V. 13. N 2. P. 250.DOI: 10.3390/diagnostics13020250
51. Popova V.K., Dmitriyenko E.V., Chubarov A.S. Magnetic Nanocomposites and Imprinted Polymers for Biomedical Applications of Nucleic Acids. Magnetochemistry. 2023.V. 9. N 1. P. 12.DOI: 10.3390/magnetochemistry9010012
52. Patrakova E.A., Biryukov M.M., Troitskaya O.S., Gugin P., Milakhina E., Semenov D.V., Poletaeva Y., Ryabchikova E.I., Novak D.D., Kryachkova N., Polyakova A., Zhilnikova M., Zakrevsky D., Schweigert I., Koval O.A..Chloroquine Enhances Death in Lung Adenocarcinoma A549 Cells Exposed to Cold Atmospheric Plasma Jet. Cells. 2023. V. 12. N 2. P. 290. DOI: 10.3390/cells12020290
53. Chernikov I.V., Staroseletc Y.Y., Tatarnikova I.S., Sen'kova A.V., Savin I.A., Markov A.V., Logashenko E.B., Chernolovskaya E.L., Zenkova M.A., Vlassov V.V..siRNA-Mediated Timp1 Silencing Inhibited the Inflammatory Phenotype during Acute Lung Injury. Int. J. Mol. Sci. 2023. V. 24. P. 1641. DOI: 10.3390/ijms24021641
54. Sen'kova A.V., Savin I.A., Odarenko K.V., Salomatina O.V., Salakhutdinov N.F., Zenkova M.A., Markov A.V. Protective effect of soloxolone derivatives in carrageenan- and LPS-driven acute inflammation: Pharmacological profiling and their effects on key inflammation-related processes. Biomedicine & Pharmacotherapy. 2023. V. 159. P. 114231. DOI: 10.1016/j.biopha.2023.114231
55. Chernyshova I.A., Zakharenko A.L., Kurochkin N.N., Dyrkheeva N.S., Kornienko T.E., Popova N.A., Nikolin V.P., Ilina E.S., Zharkov T.D., Kupryushkin M.S., Oslovsky V.E., Drenichev M.S., Lavrik O.I. The Lipophilic Purine Nucleoside—Tdp1 Inhibitor—Enhances DNA Damage Induced by Topotecan In Vitro and Potentiates the Antitumor Effect of Topotecan In Vivo. Molecules. 2023. V. 28.N 1. P. 323.DOI: 10.3390/molecules28010323
56. Mechetin G.V., Zharkov D.O. DNA damage response and repair in boron–neutron capture therapy. Genes. 2023. V. 12. N 1. P. 127. DOI: 10.3390/genes14010127
57. Chernikov I.V., Ponomareva U.A., Chernolovskaya E.L. Structural modifications of siRNA Improve ITS Performance In Vivo. Int. J. Mol. Sci. 2023. V. 24. N 2. P. 956. DOI: 10.3390/ijms24020956